What's different between two methods of POWER?
POWERˇ¦s first method combine with MSA program to
Phylip. You can just input your fasta data, then would get output of sequences
alignment and phylogenetic tree.
How should I setup parameters in these algorithms?
If you are not sure what different at the methods, standard parameters is your best choice. If you want to learn more about algorithms, please reference help documents.
Could I change parameters or algorithm by reconstructing phylogenetic tree?
Yes, you can change any parameters or algorithm you want.
Why do detail of POWER's output files different from my local program of ClustalW or Phylip?
First, if there are different in mismatch scores,
please check again parameters are all the same with POWER and your local
It depends on your input sequences length and the method you choose. In average time, total sequence length small than 50000 b.p or 5000 a.a, you can get response about 5 minute.
If you get the failed mail, please check again your parameters are all correct. If you still canˇ¦t find out the reason why job has been terminated, you can email to us include these information: your job name, email address, job send time. The information you can find on POWERˇ¦s response mail.
How many sequences would POWER tolerate?
POWER can accept 250 sequences at most. More than 3,000,00 b.p or 300,00 a.a would be ok.
Why don't I receive job mail return?
If you donˇ¦t receive job mail after one day, please resend job again and let us know.
Can I using other multiple sequence alignment data format ex.*.msa or *.aln?
Now POWER only accept PHYLIP data format ( *.phy). We are sorry for that.
© 2005 Division of Biostatistics and Bioinformatics
National Health Research Institutes. All rights reserved.
Lasted updated 2005/04/07